Publications

PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics

Published in Bioinformatics, 2020

Recommended citation: Schön M.E., Eme L., Ettema T.J.G. (2020) PhyloMagnet: fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics, Bioinformatics, Volume 36, Issue 6, 15 March 2020, Pages 1718–1724, https://doi.org/10.1093/bioinformatics/btz799

Belowground fungal community diversity and composition associated with Norway spruce along an altitudinal gradient

Published in PLoS One, 2018

Recommended citation: Schön, M. E., Nieselt, K., Garnica, S. (2018) Belowground fungal community diversity and composition associated with Norway spruce along an altitudinal gradient. PLoS ONE 13(12): e0208493. doi:10.1371/journal.pone0208493

The origin and diversification of the Entorrhizales: deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae

Published in Organisms Diversity & Evolution, 2018

Here, we describe a new ustilaginomycetous order, the Uleiellales to accommodate Uleiella. Within the Ustilaginomycetes, Uleiellales are sister taxon to the Violaceomycetales.

Recommended citation: Riess, K., Schön, M. E., & Garnica, S. (2018). The origin and diversification of the Entorrhizales : deep evolutionary roots but recent speciation with a phylogenetic and phenotypic split between associates of the Cyperaceae and Juncaceae. Organisms Diversity & Evolution.

Divergence times and phylogenetic patterns of sebacinales, a highly diverse and widespread fungal lineage

Published in PLoS One, 2016

Recommended citation: S. Garnica, K. Riess, M. E. Schön, F. Oberwinkler, and S. D. Setaro, “Divergence times and phylogenetic patterns of sebacinales, a highly diverse and widespread fungal lineage,” PLoS One, vol. 11, no. 3, pp. 1–16, 2016. doi:10.1371/journal.pone.0149531

Determining threshold values for barcoding fungi: Lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus

Published in FEMS Microbiology Ecology, 2016

Recommended citation: S. Garnica, M. E. Schön, K. Abarenkov, K. Riess, K. Liimatainen, T. Niskanen, B. Dima, K. Soop, T. G. Frøslev, T. S. Jeppesen, U. Peintner, R. Kuhnert-Finkernagel, T. E. Brandrud, G. Saar, B. Oertel, J. F. Ammirati, “Determining threshold values for barcoding fungi: Lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus,” FEMS Microbiol. Ecol., vol. 92, no. 4, p. fiw045, Apr. 2016. doi:10.1093/femsec/fiw045

On the Evolutionary History of Uleiella chilensis, a Smut Fungus Parasite of Araucaria araucana in South America: Uleiellales ord. nov. in Ustilaginomycetes